SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB41406

Signal sequence   MSGTGCFPAGEMAAVARVCRDGAAAARLKTGSLLAILVASAVGICLPVALTGAFRGKAGYARGLLLVKCYAAGVILSTSLVHVLPDAHAALADCAVATRRPWRDFPFAGLFSLVGALLALLVDLSASSHLEAHGHHQHAEEGESPPPPPPTHQPYAPIPTTKKSPVFELSGEMSPKKRAHSDDTDRDDVALFGAKSAVRSDEVVVAPRVGCHGHHDVVEVGEEGGGGEEEEARRKQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGFGIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNALIIEGLLGSLSSGILVYMALVDLISLDFFHNKMMSSSNKLKKVSYVALVLGSASMSILALWA

Length  100

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q6L8F9,

Motif  1..NA



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB41406.cif

Structure  SPKB41406.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  41326.09254

Aliphatic index  101.0126582

Isoelectric point  6.823311568

Charge (pH=7)   -4.076128326

Topological polar surface area  15968.14

Aromaticity  0.060759494

Average rotatable bonds  2.53164557

Number of hydrogen bond donors  562

Number of hydrogen bond acceptors  565

X logP energy  -315.39475

Hydropathy 



Literature Information


Title  NA

DOI  NA,

Publication Year  0

PubMed ID  NA,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.