SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB41301

Signal sequence   MYPTRPHYWRRRLSINRPQAFLLLILCLFFIHHCD

Length  35

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  Q6DUW6,

Motif  1..35



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB41301.cif

Structure  SPKB41301.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4428.31114

Aliphatic index  103.1428571

Isoelectric point  10.14422659

Charge (pH=7)   4.145491239

Topological polar surface area  1642.08

Aromaticity  0.171428571

Average rotatable bonds  3.885714286

Number of hydrogen bond donors  61

Number of hydrogen bond acceptors  54

X logP energy  -7.00125

Hydropathy 



Literature Information


Title  NA

DOI  NA,

Publication Year  0

PubMed ID  NA,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.