SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB41113

Signal sequence   MDDNGDVHFCHRATAVVALLLLHLVVVANA

Length  30

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q5Z980,

Motif  1..30



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB41113.cif

Structure  SPKB41113.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3214.75104

Aliphatic index  139.6666667

Isoelectric point  6.204334393

Charge (pH=7)   -1.789927003

Topological polar surface area  1273.47

Aromaticity  0.033333333

Average rotatable bonds  3.4

Number of hydrogen bond donors  44

Number of hydrogen bond acceptors  43

X logP energy  -10.00313

Hydropathy 



Literature Information


Title  NA

DOI  NA,

Publication Year  0

PubMed ID  NA,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.