SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB31104

Signal sequence   MDKWKYARLAQFLFTLSLLFLETSFGLGG

Length  29

Organism  Solanum lycopersicum (Tomato) (Lycopersicon esculentum)

UniProt ID  Q6JN47,

Motif  1..29



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB31104.cif

Structure  SPKB31104.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3353.96964

Aliphatic index  101.0344828

Isoelectric point  9.255260562

Charge (pH=7)   0.998762113

Topological polar surface area  1226.69

Aromaticity  0.206896552

Average rotatable bonds  3.793103448

Number of hydrogen bond donors  44

Number of hydrogen bond acceptors  42

X logP energy  -5.50193

Hydropathy 



Literature Information


Title  The receptor for the fungal elicitor ethylene-inducing xylanase is a member of a resistance-like gene family in tomato.

DOI  10.1105/tpc.022475,

Publication Year  2004

PubMed ID  15155877,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.