SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB12423

Signal sequence   MDCVKLVFLMLYTFLCQLALS

Length  21

Organism  Solanum pimpinellifolium (Currant tomato) (Lycopersicon pimpinellifolium)

UniProt ID  Q40235,

Motif  1..21



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB12423.cif

Structure  SPKB12423.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2452.08434

Aliphatic index  143.8095238

Isoelectric point  6.062245352

Charge (pH=7)   -0.126664096

Topological polar surface area  812.42

Aromaticity  0.142857143

Average rotatable bonds  3.80952381

Number of hydrogen bond donors  30

Number of hydrogen bond acceptors  32

X logP energy  -1.2554

Hydropathy 



Literature Information


Title  NA

DOI  NA,

Publication Year  0

PubMed ID  NA,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.