SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB07329

Signal sequence   MKDWLFRIATCSIMTFSSLAAAQA

Length  24

Organism  Paracoccus denitrificans (strain Pd 1222)

UniProt ID  A1B2F3,

Motif  1..24



Activity Information


Pathway  NA

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  NA



Structure Information


PDB ID  5KZJ,

Predicted Structure ID  SPKB07329.cif

Structure  SPKB07329.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2663.16294

Aliphatic index  85.83333333

Isoelectric point  8.545113874

Charge (pH=7)   0.936157722

Topological polar surface area  1017.87

Aromaticity  0.125

Average rotatable bonds  3.583333333

Number of hydrogen bond donors  38

Number of hydrogen bond acceptors  37

X logP energy  -8.65103

Hydropathy 



Literature Information


Title  Transcriptional Regulation, Metal Binding Properties and Structure of Pden1597, an Unusual Zinc Transport Protein from Paracoccus denitrificans.

DOI  10.1074/jbc.M115.645853,

Publication Year  2015

PubMed ID  25787075,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.