SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06702

Signal sequence   VKIKKSASALSRSMRIGIATITSTAMLGGVLVAVPAHPLLPTTAVAQA

Length  48

Organism  Corynebacterium glutamicum

UniProt ID  NA,

Motif  1..48



Activity Information


Pathway  Sec

Natural/Artificial  Artificial

Subcellular location  Extracellular environment

Secretion efficiency  alpha-amylase yield: 16.0578(mU/ml)

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB06702.cif

Structure  SPKB06702.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4799.79864

Aliphatic index  122.0833333

Isoelectric point  12.54607639

Charge (pH=7)   5.088001666

Topological polar surface area  1880.58

Aromaticity  0

Average rotatable bonds  3.25

Number of hydrogen bond donors  67

Number of hydrogen bond acceptors  68

X logP energy  -20.01276

Hydropathy 



Literature Information


Title  Scanning the Corynebacterium glutamicum R genome for high-efficiency secretion signal sequences

DOI  10.1099/mic.0.024075-0,

Publication Year  2009

PubMed ID  19246745,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.