SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06672

Signal sequence   MKRNSQQSTTVDHYKMFKDGKHWVYAGITIAGLGSTLMLTTNALA

Length  45

Organism  Lactobacillus plantarum WCFS1

UniProt ID  NA,

Motif  1..45



Activity Information


Pathway  Sec

Natural/Artificial  Artificial

Subcellular location  Extracellular environment

Secretion efficiency  Nuclease yield: 0.03(U/ml)

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB06672.cif

Structure  SPKB06672.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4986.75674

Aliphatic index  73.77777778

Isoelectric point  10.23770733

Charge (pH=7)   3.177811174

Topological polar surface area  2052.34

Aromaticity  0.088888889

Average rotatable bonds  3.711111111

Number of hydrogen bond donors  73

Number of hydrogen bond acceptors  73

X logP energy  -21.75033

Hydropathy 



Literature Information


Title  Genome-wide analysis of signal peptide functionality in Lactobacillus plantarum WCFS1

DOI  10.1186/1471-2164-10-425,

Publication Year  2009

PubMed ID  19744343,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.