SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06662

Signal sequence   MTKSRTLKAAMLVSVASIACLSFNNLGASA

Length  30

Organism  Lactobacillus plantarum WCFS1

UniProt ID  NA,

Motif  1..30



Activity Information


Pathway  Sec

Natural/Artificial  Artificial

Subcellular location  Extracellular environment

Secretion efficiency  Nuclease yield: 0.08(U/ml)

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB06662.cif

Structure  SPKB06662.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3056.64724

Aliphatic index  104.3333333

Isoelectric point  10.79319833

Charge (pH=7)   2.935416204

Topological polar surface area  1248.95

Aromaticity  0.033333333

Average rotatable bonds  3.433333333

Number of hydrogen bond donors  46

Number of hydrogen bond acceptors  46

X logP energy  -15.57533

Hydropathy 



Literature Information


Title  Genome-wide analysis of signal peptide functionality in Lactobacillus plantarum WCFS1

DOI  10.1186/1471-2164-10-425,

Publication Year  2009

PubMed ID  19744343,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.