SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06647

Signal sequence   MQRRRLQRAQLTEKRTYKMYKKGRLWLIAGLSTFTLGASLLPMTGRA

Length  47

Organism  Lactobacillus plantarum WCFS1

UniProt ID  NA,

Motif  1..47



Activity Information


Pathway  Sec

Natural/Artificial  Artificial

Subcellular location  Extracellular environment

Secretion efficiency  Nuclease yield: 0.46(U/ml)

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB06647.cif

Structure  SPKB06647.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  5498.60734

Aliphatic index  83.19148936

Isoelectric point  12.40220995

Charge (pH=7)   9.996855279

Topological polar surface area  2294.94

Aromaticity  0.085106383

Average rotatable bonds  4.042553191

Number of hydrogen bond donors  86

Number of hydrogen bond acceptors  75

X logP energy  -20.74321

Hydropathy 



Literature Information


Title  Genome-wide analysis of signal peptide functionality in Lactobacillus plantarum WCFS1

DOI  10.1186/1471-2164-10-425,

Publication Year  2009

PubMed ID  19744343,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.