SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06153

Signal sequence   MSFSNYKVIAMPVLVANFVLGAATAWA

Length  27

Organism  Pseudomonas putida Gpo1

UniProt ID  NA,

Motif  1..27



Activity Information


Pathway  NA

Natural/Artificial  Artificial

Subcellular location  Extracellular environment

Secretion efficiency  NA

Type  NA



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB06153.cif

Structure  SPKB06153.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2872.43604

Aliphatic index  108.5185185

Isoelectric point  9.298300651

Charge (pH=7)   0.996838851

Topological polar surface area  1020.04

Aromaticity  0.148148148

Average rotatable bonds  3.222222222

Number of hydrogen bond donors  35

Number of hydrogen bond acceptors  37

X logP energy  -6.0685

Hydropathy 



Literature Information


Title  Production of 12-hydroxy dodecanoic acid methyl ester using a signal peptide sequence-optimized transporter AlkL and a novel monooxygenase

DOI  10.1016/j.biortech.2019.121812,

Publication Year  2019

PubMed ID  31376668,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.