SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06112

Signal sequence   MRVKGIRKSYQQLWKGGTLLLGILMICSA

Length  29

Organism  Human immunodeficiency virus type 1 (HIV-1)

UniProt ID  NA,

Motif  1..29



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Artificial

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB06112.cif

Structure  SPKB06112.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3265.04284

Aliphatic index  121.034482758621

Isoelectric point  11.1113421106711

Charge (pH=7)   4.93426744509256

Topological polar surface area  1262.87

Aromaticity  0.0689655172413793

Average rotatable bonds  3.93103448275862

Number of hydrogen bond donors  47

Number of hydrogen bond acceptors  44

X logP energy  -8.53876000000003

Hydropathy 



Literature Information


Title  Alterations of HIV-1 envelope phenotype and antibody-mediated neutralization by signal peptide mutations

DOI  10.1371/journal.ppat.1006812,

Publication Year  2018

PubMed ID  29370305,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.