SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06029

Signal sequence   LVLGAVILGSTLLAG

Length  15

Organism  Caenorhabditis elegans

UniProt ID  NA,

Motif  1..15



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Artificial

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB06029.cif

Structure  SPKB06029.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  1396.73344

Aliphatic index  208

Isoelectric point  6.099999998

Charge (pH=7)   -0.002015701

Topological polar surface area  511.18

Aromaticity  0

Average rotatable bonds  3

Number of hydrogen bond donors  18

Number of hydrogen bond acceptors  18

X logP energy  -2.9188

Hydropathy 



Literature Information


Title  DeepSig: deep learning improves signal peptide detection in proteins

DOI  10.1093/bioinformatics/btx818,

Publication Year  2018

PubMed ID  29280997,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.