SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB06012

Signal sequence   MDMRVPAQLLGLLLLWLPGARC

Length  22

Organism  Homo sapiens (Human)

UniProt ID  NA,

Motif  1..22



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Artificial

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  7WUE,

Predicted Structure ID  SPKB06012.cif

Structure  SPKB06012.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2467.08994

Aliphatic index  146.3636364

Isoelectric point  8.54983383

Charge (pH=7)   0.936449445

Topological polar surface area  876.82

Aromaticity  0.045454545

Average rotatable bonds  3.545454545

Number of hydrogen bond donors  31

Number of hydrogen bond acceptors  30

X logP energy  -2.70046

Hydropathy 



Literature Information


Title  Improving Pertuzumab production by gene optimization and proper signal peptide selection

DOI  10.1016/j.pep.2017.04.013,

Publication Year  2017

PubMed ID  28476488,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.