SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05706

Signal sequence   MKKTLLATAIAGAMAASGAQA

Length  21

Organism  Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)

UniProt ID  E1V825,

Motif  1..21



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Cell membrane

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05706.cif

Structure  SPKB05706.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  1976.38014

Aliphatic index  93.80952381

Isoelectric point  10.80537956

Charge (pH=7)   1.997394232

Topological polar surface area  801.14

Aromaticity  0

Average rotatable bonds  3.19047619

Number of hydrogen bond donors  28

Number of hydrogen bond acceptors  30

X logP energy  -9.5618

Hydropathy 



Literature Information


Title  Major outer membrane proteins in moderately halophilic eubacteria of genera Chromohalobacter and Halomonas.

DOI  10.1002/jobm.200310343,

Publication Year  2004

PubMed ID  15162397,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.