SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05650

Signal sequence   MAAKLPTVVLLASFAAVILSLAAPLLA

Length  27

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q942A7,

Motif  1..27



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05650.cif

Structure  SPKB05650.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2665.35684

Aliphatic index  177.4074074

Isoelectric point  9.700002532

Charge (pH=7)   0.997689266

Topological polar surface area  889.05

Aromaticity  0.037037037

Average rotatable bonds  3.037037037

Number of hydrogen bond donors  30

Number of hydrogen bond acceptors  33

X logP energy  -2.9983

Hydropathy 



Literature Information


Title  Proteomic analysis of rice leaf, stem and root tissues during growth course.

DOI  10.1002/pmic.200600043,

Publication Year  2006

PubMed ID  16758443,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.