SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05639

Signal sequence   MHMNKPLQAWRTPLLTLIFVLPLTATG

Length  27

Organism  Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))

UniProt ID  Q8RJP2,

Motif  1..27



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Extracellular environment

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05639.cif

Structure  SPKB05639.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3063.75584

Aliphatic index  119.2592593

Isoelectric point  11.65178972

Charge (pH=7)   2.088595045

Topological polar surface area  1093.04

Aromaticity  0.074074074

Average rotatable bonds  3.481481481

Number of hydrogen bond donors  37

Number of hydrogen bond acceptors  39

X logP energy  -5.33333

Hydropathy 



Literature Information


Title  Rhamnogalacturonate lyase RhiE is secreted by the out system in Erwinia chrysanthemi.

DOI  10.1128/JB.185.5.1642-1649.2003,

Publication Year  2003

PubMed ID  12591882,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.