SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05625

Signal sequence   MPGFRFLLAATAAFLATSPALPLSA

Length  25

Organism  Rhodovulum sulfidophilum (Rhodobacter sulfidophilus)

UniProt ID  Q8GPG1,

Motif  1..25



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05625.cif

Structure  SPKB05625.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2535.04234

Aliphatic index  106

Isoelectric point  10.55000222

Charge (pH=7)   0.997980988

Topological polar surface area  878.17

Aromaticity  0.12

Average rotatable bonds  2.92

Number of hydrogen bond donors  30

Number of hydrogen bond acceptors  32

X logP energy  -5.95603

Hydropathy 



Literature Information


Title  Molecular analysis of dimethyl sulphide dehydrogenase from Rhodovulum sulfidophilum: its place in the dimethyl sulphoxide reductase family of microbial molybdopterin-containing enzymes.

DOI  10.1046/j.1365-2958.2002.02978.x,

Publication Year  2002

PubMed ID  12067345,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.