SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05604

Signal sequence   MARLHLVVVAMAALFAAAAVAQGPSASPTPAPKAQPPVATPP

Length  42

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q6Z232,

Motif  1..42



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05604.cif

Structure  SPKB05604.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4074.85884

Aliphatic index  93.33333333

Isoelectric point  11.65178972

Charge (pH=7)   2.088595045

Topological polar surface area  1469.8

Aromaticity  0.023809524

Average rotatable bonds  2.714285714

Number of hydrogen bond donors  46

Number of hydrogen bond acceptors  54

X logP energy  -13.98273

Hydropathy 



Literature Information


Title  Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa).

DOI  10.1093/pcp/pch208,

Publication Year  2004

PubMed ID  15653800,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.