SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05603

Signal sequence   MASSSFLLLATLLAMASWQGMA

Length  22

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q6YZY5,

Motif  1..22



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05603.cif

Structure  SPKB05603.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2300.77434

Aliphatic index  111.3636364

Isoelectric point  6.099999998

Charge (pH=7)   -0.002015701

Topological polar surface area  834.45

Aromaticity  0.090909091

Average rotatable bonds  3.363636364

Number of hydrogen bond donors  30

Number of hydrogen bond acceptors  32

X logP energy  -6.618

Hydropathy 



Literature Information


Title  Proteomic analysis of rice leaf, stem and root tissues during growth course.

DOI  10.1002/pmic.200600043,

Publication Year  2006

PubMed ID  16758443,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.