SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05558

Signal sequence   MYKNKKTRPAARTVGCLFALGALGLGSAAHA

Length  31

Organism  Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

UniProt ID  Q51485,

Motif  1..31



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Cell membrane

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05558.cif

Structure  SPKB05558.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3174.77594

Aliphatic index  82.25806452

Isoelectric point  11.11135503

Charge (pH=7)   5.025176536

Topological polar surface area  1282.08

Aromaticity  0.064516129

Average rotatable bonds  3.35483871

Number of hydrogen bond donors  47

Number of hydrogen bond acceptors  45

X logP energy  -13.66366

Hydropathy 



Literature Information


Title  Biophysical characterization of OprB, a glucose-inducible porin of Pseudomonas aeruginosa.

DOI  10.1007/BF01108411,

Publication Year  1993

PubMed ID  8132494,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.