SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05497

Signal sequence   MPQQSMQASLRDPIAEIERSNCKI

Length  24

Organism  Populus deltoides (Eastern poplar) (Eastern cottonwood)

UniProt ID  Q09117,

Motif  1..24



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05497.cif

Structure  SPKB05497.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2746.16704

Aliphatic index  73.33333333

Isoelectric point  6.407804732

Charge (pH=7)   -0.060295343

Topological polar surface area  1209.81

Aromaticity  0

Average rotatable bonds  3.916666667

Number of hydrogen bond donors  41

Number of hydrogen bond acceptors  41

X logP energy  -14.27006

Hydropathy 



Literature Information


Title  Complementary DNA cloning of poplar bark storage protein and control of its expression by photoperiod.

DOI  10.1104/pp.98.2.687,

Publication Year  1992

PubMed ID  16668696,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.