SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05304

Signal sequence   MDYSRLLKRSVSAALTAAALLCSTAAFA

Length  28

Organism  Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)

UniProt ID  P29822,

Motif  1..28



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05304.cif

Structure  SPKB05304.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2902.41994

Aliphatic index  108.5714286

Isoelectric point  9.446889901

Charge (pH=7)   1.935303997

Topological polar surface area  1177.75

Aromaticity  0.071428571

Average rotatable bonds  3.357142857

Number of hydrogen bond donors  45

Number of hydrogen bond acceptors  42

X logP energy  -12.73146

Hydropathy 



Literature Information


Title  Binding-protein-dependent lactose transport in Agrobacterium radiobacter.

DOI  10.1128/jb.172.4.1703-1710.1990,

Publication Year  1990

PubMed ID  2318800,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.