SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05105

Signal sequence   MASINRPIVFFTVCLFLLCNGSLA

Length  24

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  P07728,

Motif  1..24



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05105.cif

Structure  SPKB05105.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2630.21964

Aliphatic index  130

Isoelectric point  8.231408964

Charge (pH=7)   0.874031556

Topological polar surface area  932.6

Aromaticity  0.125

Average rotatable bonds  3.416666667

Number of hydrogen bond donors  34

Number of hydrogen bond acceptors  34

X logP energy  -5.96503

Hydropathy 



Literature Information


Title  Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003.

DOI  10.1093/nar/gkh020,

Publication Year  2004

PubMed ID  14681440,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.