SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05035

Signal sequence   MKKMFLTGVLALAVAIAMPALAA

Length  23

Organism  Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) (Desulfovibrio vulgaris)

UniProt ID  P00132,

Motif  1..23



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05035.cif

Structure  SPKB05035.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2332.00534

Aliphatic index  140.4347826

Isoelectric point  10.80537956

Charge (pH=7)   1.997394232

Topological polar surface area  767

Aromaticity  0.043478261

Average rotatable bonds  3.304347826

Number of hydrogen bond donors  26

Number of hydrogen bond acceptors  30

X logP energy  -1.9759

Hydropathy 



Literature Information


Title  Amino acid sequence of cytochrome c3 from Desulfovibrio vulgaris, Miyazaki.

DOI  10.1093/oxfordjournals.jbchem.a132919,

Publication Year  1980

PubMed ID  6249799,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.