SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05033

Signal sequence   MKRILVVMSICAALAFGVSAAMA

Length  23

Organism  Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) (Desulfovibrio vulgaris)

UniProt ID  P00120,

Motif  1..23



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05033.cif

Structure  SPKB05033.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2353.98654

Aliphatic index  131.7391304

Isoelectric point  9.833242293

Charge (pH=7)   1.935711238

Topological polar surface area  831.9

Aromaticity  0.043478261

Average rotatable bonds  3.391304348

Number of hydrogen bond donors  31

Number of hydrogen bond acceptors  32

X logP energy  -5.22423

Hydropathy 



Literature Information


Title  Amino acid sequence of cytochrome c-553 from Desulfovibrio vulgaris Miyazaki.

DOI  NA,

Publication Year  1983

PubMed ID  6313657,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.