SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05031

Signal sequence   MKISIYATLAAITLALPAAA

Length  20

Organism  Paracoccus denitrificans

UniProt ID  P00096,

Motif  1..20



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Extracellular environment

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05031.cif

Structure  SPKB05031.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2003.47104

Aliphatic index  152

Isoelectric point  9.298300651

Charge (pH=7)   0.996838851

Topological polar surface area  714.37

Aromaticity  0.05

Average rotatable bonds  3.1

Number of hydrogen bond donors  25

Number of hydrogen bond acceptors  27

X logP energy  -3.8841

Hydropathy 



Literature Information


Title  A reassessment of the structure of Paracoccus cytochrome c-550.

DOI  10.1016/0022-2836(81)90445-9,

Publication Year  1981

PubMed ID  6270339,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.