SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05013

Signal sequence   MSYARRSCICGLFLLFLALVCEA

Length  23

Organism  Solanum lycopersicum (Tomato) (Lycopersicon esculentum)

UniProt ID  O48540,

Motif  1..23



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05013.cif

Structure  SPKB05013.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2580.17764

Aliphatic index  127.3913043

Isoelectric point  8.041793763

Charge (pH=7)   0.812978238

Topological polar surface area  925.31

Aromaticity  0.130434783

Average rotatable bonds  3.608695652

Number of hydrogen bond donors  37

Number of hydrogen bond acceptors  34

X logP energy  -4.96026

Hydropathy 



Literature Information


Title  Molecular cloning of a cDNA encoding a (1-->4)-beta-mannan endohydrolase from the seeds of germinated tomato (Lycopersicon esculentum).

DOI  10.1007/s004250050214,

Publication Year  1997

PubMed ID  9421930,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.