SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB05010

Signal sequence   MSEHKNGHTRRDFLLRTITLAPAMAVGSTAMGALVAPMAAGA

Length  42

Organism  Pantoea cypripedii (Pectobacterium cypripedii) (Erwinia cypripedii)

UniProt ID  O34213,

Motif  1..42



Activity Information


Pathway  Tat

Natural/Artificial  Natural

Subcellular location  Cell membrane

Secretion efficiency  NA

Type  Tat/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB05010.cif

Structure  SPKB05010.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4324.07814

Aliphatic index  81.66666667

Isoelectric point  11.37809445

Charge (pH=7)   2.18171912

Topological polar surface area  1746.99

Aromaticity  0.023809524

Average rotatable bonds  3.333333333

Number of hydrogen bond donors  62

Number of hydrogen bond acceptors  62

X logP energy  -19.63709

Hydropathy 



Literature Information


Title  Cloning and expression of a gene cluster encoding three subunits of membrane-bound gluconate dehydrogenase from Erwinia cypripedii ATCC 29267 in Escherichia coli.

DOI  10.1128/jb.179.21.6566-6572.1997,

Publication Year  1997

PubMed ID  9352901,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.