SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04976

Signal sequence   MSVNRSSIKSLLMVFMIVSSSLLAPVGGAAA

Length  31

Organism  Halorubrum pleomorphic virus 1 (HRPV-1)

UniProt ID  C1JJY3,

Motif  1..31



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04976.cif

Structure  SPKB04976.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3137.80494

Aliphatic index  125.8064516

Isoelectric point  11.65177567

Charge (pH=7)   1.997685954

Topological polar surface area  1200.15

Aromaticity  0.032258065

Average rotatable bonds  3.35483871

Number of hydrogen bond donors  43

Number of hydrogen bond acceptors  45

X logP energy  -12.59273

Hydropathy 



Literature Information


Title  An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope.

DOI  10.1111/j.1365-2958.2009.06642.x,

Publication Year  2009

PubMed ID  19298373,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.