SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04968

Signal sequence   MAKTVLGIHVTFLTLLFAVILLNDVMYTPVE

Length  31

Organism  Stellaria media (Common chickweed) (Alsine media)

UniProt ID  C0HL83,

Motif  1..31



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04968.cif

Structure  SPKB04968.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3463.23754

Aliphatic index  153.8709677

Isoelectric point  5.454234712

Charge (pH=7)   -0.910030451

Topological polar surface area  1201.07

Aromaticity  0.096774194

Average rotatable bonds  3.548387097

Number of hydrogen bond donors  41

Number of hydrogen bond acceptors  44

X logP energy  -3.4587

Hydropathy 



Literature Information


Title  Isolation, molecular cloning and antimicrobial activity of novel defensins from common chickweed (Stellaria media L.) seeds.

DOI  10.1016/j.biochi.2010.10.019,

Publication Year  2011

PubMed ID  21056078,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.