SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04948

Signal sequence   MASRILYAAAVVAAVAVSSLAGVAYA

Length  26

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  A9UGV7,

Motif  1..26



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04948.cif

Structure  SPKB04948.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2495.96304

Aliphatic index  139.2307692

Isoelectric point  9.17162813

Charge (pH=7)   0.99628016

Topological polar surface area  953.87

Aromaticity  0.076923077

Average rotatable bonds  2.923076923

Number of hydrogen bond donors  35

Number of hydrogen bond acceptors  34

X logP energy  -8.34313

Hydropathy 



Literature Information


Title  Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa).

DOI  10.1093/pcp/pch208,

Publication Year  2004

PubMed ID  15653800,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.