SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04947

Signal sequence   MARFSAAAVIAFAVVAAAALATVASA

Length  26

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  A9UGV6,

Motif  1..26



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04947.cif

Structure  SPKB04947.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2421.88364

Aliphatic index  124.6153846

Isoelectric point  10.55000222

Charge (pH=7)   0.997980988

Topological polar surface area  913.41

Aromaticity  0.076923077

Average rotatable bonds  2.807692308

Number of hydrogen bond donors  33

Number of hydrogen bond acceptors  32

X logP energy  -8.63963

Hydropathy 



Literature Information


Title  Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa).

DOI  10.1093/pcp/pch208,

Publication Year  2004

PubMed ID  15653800,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.