SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04946

Signal sequence   MAGQLKSKIVAVAVAAVVVVASSLVGTASA

Length  30

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  A9UGV5,

Motif  1..30



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04946.cif

Structure  SPKB04946.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2798.37784

Aliphatic index  143

Isoelectric point  10.80537956

Charge (pH=7)   1.997394232

Topological polar surface area  1103.5

Aromaticity  0

Average rotatable bonds  3.066666667

Number of hydrogen bond donors  39

Number of hydrogen bond acceptors  40

X logP energy  -12.1076

Hydropathy 



Literature Information


Title  Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa).

DOI  10.1093/pcp/pch208,

Publication Year  2004

PubMed ID  15653800,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.