SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04904

Signal sequence   MEAMKMRLFVAVLVAAMAFSAVQQAAA

Length  27

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  Q9STQ3,

Motif  1..27



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04904.cif

Structure  SPKB04904.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2856.51394

Aliphatic index  105.1851852

Isoelectric point  9.695027686

Charge (pH=7)   0.999461077

Topological polar surface area  1051.55

Aromaticity  0.074074074

Average rotatable bonds  3.518518519

Number of hydrogen bond donors  36

Number of hydrogen bond acceptors  38

X logP energy  -6.82343

Hydropathy 



Literature Information


Title  The classical arabinogalactan protein gene family of arabidopsis.

DOI  10.1105/tpc.12.9.1751,

Publication Year  2000

PubMed ID  11006345,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.