SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04880

Signal sequence   MESMKMKLIVVLMVAIVAFSAVGNVAA

Length  27

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  Q9LJD9,

Motif  1..27



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04880.cif

Structure  SPKB04880.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2823.56524

Aliphatic index  140.7407407

Isoelectric point  9.537300927

Charge (pH=7)   0.999169354

Topological polar surface area  992.81

Aromaticity  0.037037037

Average rotatable bonds  3.555555556

Number of hydrogen bond donors  34

Number of hydrogen bond acceptors  38

X logP energy  -4.9077

Hydropathy 



Literature Information


Title  The classical arabinogalactan protein gene family of arabidopsis.

DOI  10.1105/tpc.12.9.1751,

Publication Year  2000

PubMed ID  11006345,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.