SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04878

Signal sequence   MQTPKLIRPTLLSMAILSSMAWATGASA

Length  28

Organism  Pseudomonas syringae pv. syringae

UniProt ID  Q9L7P2,

Motif  1..28



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04878.cif

Structure  SPKB04878.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2947.56234

Aliphatic index  101.4285714

Isoelectric point  11.65177567

Charge (pH=7)   1.997685954

Topological polar surface area  1119.85

Aromaticity  0.035714286

Average rotatable bonds  3.357142857

Number of hydrogen bond donors  40

Number of hydrogen bond acceptors  42

X logP energy  -10.73953

Hydropathy 



Literature Information


Title  Characterization of alginate lyase from Pseudomonas syringae pv. syringae.

DOI  10.1128/JB.182.21.6268-6271.2000,

Publication Year  2000

PubMed ID  11029455,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.