SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04722

Signal sequence   MARGGGAAGVSMAHHLGIALVVLVFAAMAQVARG

Length  34

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q5NAT0,

Motif  1..34



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04722.cif

Structure  SPKB04722.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3290.95694

Aliphatic index  115

Isoelectric point  12.50011104

Charge (pH=7)   2.179795859

Topological polar surface area  1268.1

Aromaticity  0.029411765

Average rotatable bonds  3.147058824

Number of hydrogen bond donors  45

Number of hydrogen bond acceptors  44

X logP energy  -11.95346

Hydropathy 



Literature Information


Title  A rice family 9 glycoside hydrolase isozyme with broad substrate specificity for hemicelluloses in type II cell walls.

DOI  10.1093/pcp/pcl020,

Publication Year  2006

PubMed ID  17056618,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.