SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04716

Signal sequence   MEASRRWPYAAWFMAVLGLVAVFSSSEA

Length  28

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q5JNJ5,

Motif  1..28



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04716.cif

Structure  SPKB04716.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3133.63284

Aliphatic index  80.35714286

Isoelectric point  6.526612717

Charge (pH=7)   0.000677508

Topological polar surface area  1171.36

Aromaticity  0.178571429

Average rotatable bonds  3.392857143

Number of hydrogen bond donors  43

Number of hydrogen bond acceptors  40

X logP energy  -7.58166

Hydropathy 



Literature Information


Title  Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa).

DOI  10.1093/pcp/pch208,

Publication Year  2004

PubMed ID  15653800,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.