SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04705

Signal sequence   MFKPVVKSRSSRSFCYLAGCLAMVAATLSSTAQA

Length  34

Organism  Sphingopyxis sp. (strain 113P3)

UniProt ID  Q588Z2,

Motif  1..34



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04705.cif

Structure  SPKB04705.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3583.25794

Aliphatic index  77.64705882

Isoelectric point  10.26355266

Charge (pH=7)   3.872587763

Topological polar surface area  1415.83

Aromaticity  0.088235294

Average rotatable bonds  3.411764706

Number of hydrogen bond donors  54

Number of hydrogen bond acceptors  53

X logP energy  -16.67506

Hydropathy 



Literature Information


Title  Biochemical and molecular characterization of a periplasmic hydrolase for oxidized polyvinyl alcohol from Sphingomonas sp. strain 113P3.

DOI  10.1099/mic.0.27655-0,

Publication Year  2005

PubMed ID  15817792,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.