SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04485

Signal sequence   MQTRNTFSWIREEITRSISVSLMIYIITWASISSA

Length  35

Organism  Brassica rapa subsp. rapa (Turnip)

UniProt ID  P36438,

Motif  1..35



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04485.cif

Structure  SPKB04485.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4092.74064

Aliphatic index  103.1428571

Isoelectric point  9.34645618

Charge (pH=7)   1.000674197

Topological polar surface area  1673.54

Aromaticity  0.114285714

Average rotatable bonds  3.828571429

Number of hydrogen bond donors  63

Number of hydrogen bond acceptors  57

X logP energy  -15.77909

Hydropathy 



Literature Information


Title  Proteolytic removal of the C-terminal transmembrane region of cytochrome f during extraction from turnip and charlock leaves generates a water-soluble monomeric form of the protein.

DOI  10.1111/j.1432-1033.1994.tb19016.x,

Publication Year  1994

PubMed ID  8055917,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.