SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04216

Signal sequence   MGLFNISLLLTCLMVLAIFHSCEA

Length  24

Organism  Solanum lycopersicum (Tomato) (Lycopersicon esculentum)

UniProt ID  P04284,

Motif  1..24



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04216.cif

Structure  SPKB04216.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2640.27044

Aliphatic index  150.4166667

Isoelectric point  5.358674626

Charge (pH=7)   -1.033280919

Topological polar surface area  902.38

Aromaticity  0.083333333

Average rotatable bonds  3.583333333

Number of hydrogen bond donors  33

Number of hydrogen bond acceptors  35

X logP energy  -3.8327

Hydropathy 



Literature Information


Title  Amino acid sequence of the ;pathogenesis-related' leaf protein p14 from viroid-infected tomato reveals a new type of structurally unfamiliar proteins.

DOI  10.1002/j.1460-2075.1985.tb03998.x,

Publication Year  1985

PubMed ID  16453639,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.