SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04120

Signal sequence   MNRRDFLKGIASSSFVVLGGSSVLTPLNALA

Length  31

Organism  Shewanella massilia

UniProt ID  O87948,

Motif  1..31



Activity Information


Pathway  Tat

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Tat/SPI



Structure Information


PDB ID  1TMO,

Predicted Structure ID  SPKB04120.cif

Structure  SPKB04120.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3221.76544

Aliphatic index  113.2258065

Isoelectric point  11.47969964

Charge (pH=7)   1.998129127

Topological polar surface area  1322.21

Aromaticity  0.064516129

Average rotatable bonds  3.419354839

Number of hydrogen bond donors  47

Number of hydrogen bond acceptors  45

X logP energy  -14.89116

Hydropathy 



Literature Information


Title  Molecular analysis of the trimethylamine N-oxide (TMAO) reductase respiratory system from a Shewanella species.

DOI  10.1006/jmbi.1998.2155,

Publication Year  1998

PubMed ID  9813127,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.