SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB04117

Signal sequence   MASRNSVTGFALFSFVFAVILSLAGA

Length  26

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  O82337,

Motif  1..26



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB04117.cif

Structure  SPKB04117.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2677.15664

Aliphatic index  112.6923077

Isoelectric point  10.55000222

Charge (pH=7)   0.997980988

Topological polar surface area  996.96

Aromaticity  0.153846154

Average rotatable bonds  3.230769231

Number of hydrogen bond donors  36

Number of hydrogen bond acceptors  35

X logP energy  -8.75443

Hydropathy 



Literature Information


Title  The classical arabinogalactan protein gene family of arabidopsis.

DOI  10.1105/tpc.12.9.1751,

Publication Year  2000

PubMed ID  11006345,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.