SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03997

Signal sequence   MIPVFLAAVAAFLPLTSG

Length  18

Organism  Trametes coccinea (strain BRFM310) (Pycnoporus coccineus)

UniProt ID  A0A2I6QB00,

Motif  1..18



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03997.cif

Structure  SPKB03997.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  1818.24764

Aliphatic index  141.1111111

Isoelectric point  6.099999998

Charge (pH=7)   -0.002015701

Topological polar surface area  580.9

Aromaticity  0.111111111

Average rotatable bonds  2.888888889

Number of hydrogen bond donors  19

Number of hydrogen bond acceptors  22

X logP energy  -1.5287

Hydropathy 



Literature Information


Title  Lytic xylan oxidases from wood-decay fungi unlock biomass degradation.

DOI  10.1038/nchembio.2558,

Publication Year  2018

PubMed ID  29377002,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.