SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03984

Signal sequence   MRPNLLAAAIAVPLSLLAAQIAQA

Length  24

Organism  Pseudoxanthomonas mexicana

UniProt ID  V5YM14,

Motif  1..24



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Extracellular environment

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  4Y06,

Predicted Structure ID  SPKB03984.cif

Structure  SPKB03984.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2416.95094

Aliphatic index  159.1666667

Isoelectric point  10.55000222

Charge (pH=7)   0.997980988

Topological polar surface area  926.44

Aromaticity  0

Average rotatable bonds  3.166666667

Number of hydrogen bond donors  30

Number of hydrogen bond acceptors  31

X logP energy  -6.88593

Hydropathy 



Literature Information


Title  Identification of the catalytic triad of family S46 exopeptidases, closely related to clan PA endopeptidases.

DOI  10.1038/srep04292,

Publication Year  2014

PubMed ID  24598890,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.