SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03974

Signal sequence   MGMSWWLACAAAFSALCVLKASS

Length  23

Organism  Mus musculus (Mouse)

UniProt ID  Q9Z0K8,

Motif  1..23



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03974.cif

Structure  SPKB03974.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2404.90344

Aliphatic index  89.56521739

Isoelectric point  8.229691165

Charge (pH=7)   0.873739834

Topological polar surface area  842.04

Aromaticity  0.130434783

Average rotatable bonds  3.217391304

Number of hydrogen bond donors  33

Number of hydrogen bond acceptors  33

X logP energy  -6.2363

Hydropathy 



Literature Information


Title  Vanin-1, a novel GPI-linked perivascular molecule involved in thymus homing.

DOI  10.1016/s1074-7613(00)80496-3,

Publication Year  1996

PubMed ID  8934567,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.