SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03917

Signal sequence   MAIRARSSSYAAAAVALALALASVAAVAG

Length  29

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q9SLY8,

Motif  1..29



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03917.cif

Structure  SPKB03917.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2704.18334

Aliphatic index  128.6206897

Isoelectric point  11.14762293

Charge (pH=7)   1.997127263

Topological polar surface area  1103.07

Aromaticity  0.034482759

Average rotatable bonds  2.931034483

Number of hydrogen bond donors  41

Number of hydrogen bond acceptors  38

X logP energy  -12.78766

Hydropathy 



Literature Information


Title  Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003.

DOI  10.1093/nar/gkh020,

Publication Year  2004

PubMed ID  14681440,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.