SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03876

Signal sequence   MASRNRALFSVSTLFLCFIVCIS

Length  23

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  Q9LXD6,

Motif  1..23



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03876.cif

Structure  SPKB03876.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2579.13174

Aliphatic index  118.6956522

Isoelectric point  8.834915637

Charge (pH=7)   1.874028245

Topological polar surface area  971.56

Aromaticity  0.130434783

Average rotatable bonds  3.608695652

Number of hydrogen bond donors  38

Number of hydrogen bond acceptors  35

X logP energy  -8.26106

Hydropathy 



Literature Information


Title  Purification, functional characterization, cloning, and identification of mutants of a seed-specific arabinan hydrolase in Arabidopsis.

DOI  10.1093/jxb/erj205,

Publication Year  2006

PubMed ID  16798843,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.