SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03875

Signal sequence   MEAMKMKLYVVVLVAVIAFSTVHQTVAA

Length  28

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  Q9LVC0,

Motif  1..28



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03875.cif

Structure  SPKB03875.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3050.76994

Aliphatic index  132.1428571

Isoelectric point  9.258471166

Charge (pH=7)   1.089228031

Topological polar surface area  1091.05

Aromaticity  0.071428571

Average rotatable bonds  3.571428571

Number of hydrogen bond donors  38

Number of hydrogen bond acceptors  41

X logP energy  -5.124

Hydropathy 



Literature Information


Title  The classical arabinogalactan protein gene family of arabidopsis.

DOI  10.1105/tpc.12.9.1751,

Publication Year  2000

PubMed ID  11006345,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.